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NEWS
2019-11-04
Congratulations Matias for the "Best Poster" award at the X International Conference on Bioinformatics - Celebrating the 10th Anniversary of SoIBio and 10th Anniversary of the Master in Bioinformatics Uruguay.
2019-10-03
"Statins: Complex outcomes but increasingly helpful treatment options for patients" by Mohammadkhani, Korsching et al. has been published by European Journal of Pharmacology.
Goto
2019-10-01
Congratulations to Marten - another successful Master of Science.
2019-09-16
"An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryo" by Israel, Makalowski et al. has been published by Scientific Reports.
Goto
2019-08-05
"Bioinformatics of nanopore sequencing" by Makalowski and Shabardina has been published by Journal of Human Genetics
Goto
2019-07-23
Researchers in the field of bioinformatics at Muenster University, Germany and Mr. Fujihiko Minamoto (second from left)
Goto
2019-06-18
Felix defended his master
2019-05-29
Wolfgang takes his retirement
2019-05-29
Jonas made his defense
2019-01-24
"NanoPipe - a web server for nanopore MinION sequencing data analysis" by Shabardina et al. has been published by GigaScience.
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Victoria Shabardina

Victoria Shabardina
Dr. rer. nat. Victoria Shabardina
postdoctoral researcher
shabardi@uni-muenster.de
Background
  • graduated from Moscow State University in 2010, Department of Biology, Bioorganic Chemistry
  • postgraduate studies completed in 2015 at ZMBE, Institute for Medical Biochemistry, University of Muenster supervisor Prof. Volker Gerke
Main experience
  • cell culture, molecular cloning and expression of recombinant proteins
  • biochemical chrachterisation of proteins: binding and localization in the cell, conformation, physical properties
  • confocal fluorescent microscopy, spectrometry, FRET, QCM
  • high throughput sequencing and the data analysis, analysis of RNAseq data, molecular phylogeny, comparative transcriptomics
Current projects
  • phylogenetic analysis of ERM (ezrin, radixin, moesin) cytoskeletal proteins in Metazoa
  • development of the pipeline for the analysis of ONT MinION sequencing data
  • side projects: genome and transcriptome analysis of Tardigrades; searching for specific SNVs in the uORF regions in cancer patients genomic data
Completed projects
  • comparing genome and transcriptome structures of the two amoeba species with the different ecological background
Teaching experience
  • Conducting practicals and delivering part of the lecture course for the bachelor students of Universuty of Muenster
  • Conducting workshops on bioinformatics analysis of MinION sequencing data at the summer schools "The MinION sequencing and its applications" in 2017 (Bankgkok, Thailand) and 2018 (Manado, Indonesia), and Bioinformatics Summer School 2017 in Poznan, Poland
List of publications
  • Mode of ezrin-membrane interaction as a Function of PIP2 binding and pseudophosphorylation, Biophys J. 2016 by Shabardina V., Kramer C., Gerdes B., Braunger J., Cordes A., Schaefer J., Mey I., Grill D., Gerke V., Steinem C. See here
  • Environmental adaptation of Acanthamoeba castellanii and Entamoeba histolytica at genome level as seen by comparative genomic analysis, Int J Biol Sci. 2018 by Shabardina V., Kischka T., Kmita H., Suzuki Y., Makalowski W. See here
  • The emerging picture of the mitochondrial protein import complexes of Amoebozoa supergroup, BMC Genomics 2017 by Wojtkowska M.,\ Buczek D., Suzuki Y., Shabardina V., Makalowski W., Kmita H. See here
  • Chapter for "Bioinformatics", Makalowski W., Shabardina V., Makalowska I., 2018, eLS, John Wiley & Sons Ltd, Chichester
  • NanoPipe, an interactive tool for MinION sequencing analysis, GigaScience 2019, in print by Shabardina V., Kischka T., Manske F., Grundmann N., Frith M.C., Suzuki Y., Makalowski W.
2019-01-25 15:31