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2017-07-14
"Serotyping dengue virus with isothermal amplification and a portable sequencer.” by Yamagishi at al. has been published by Scientific Reports.
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2017-04-21
"Contribution of Transposable Elements to Human Proteins" by Makalowski, Kischka and Makalowska has been published by eLS.
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2017-04-25
"Multicolor immuno- fluorescence reveals that p63- and or K5-positive progenitor cells contribute to normal breast epithelium and usual ductal hyperplasia but not to low-grade intraepithelial neoplasia of the breast." by Boecker / Korsching et al. has been published by Virchows Archiv.
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2017-03-07
Congratulations to Marcin Jakalski for the successful defense of his PhD thesis.
2016-12-09
Congrats to Gesche Frohwitter, external Dr.med.dent. candidate, for her successful defense of her thesis :)
2016-08
Welcome to our institute, Mahsa :)
2016-08-04
"Comparative genomic analysis of retrogene repertoire in two green algae Volvox carteri and Chlamydomonas reinhardtii" by Jakalski et al. has been published by Biology Direct.
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2016-07-15
“Conservation of the Exon-Intron Structure of Long Intergenic Non-Coding RNA Genes in Eutherian Mammals” by Chernikova et al. has been published by Life.
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2016-07-13
"TMAinspiration: Decode Interdependencies in Multifactorial Tissue Microarray Data" has been published by Florian B, Horst B, Nikhil V. M and Eberhard K
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2016-05-20
Welcome to our institute, Victoria and Philipp :)
2016-05-09
"Mycophenolic Acid and Its Derivatives as Potential Chemotherapeutic Agents Targeting Inosine Monophosphate Dehydrogenase in Trypanosoma congolense" by Suganuma, Jakalski et al. has been published in Antimicrobial Agents and Chemotherapy.
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2016-03-14
Incomplete Lineage Sorting and Hybridization Statistics for Large-Scale Retroposon Insertion Data by Kuritzin, Kischka et al. has been published by PLoS Computational Biology.
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2016-02-06
"Protein import complexes in the mitochondrial outer membrane of Amoebozoa representatives" by Buczek et al. has been published by BMC Genomics.
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2016-01-18
"The second European interdisciplinary Ewing sarcoma research summit - A joint effort to deconstructing the multiple layers of a complex disease" by Korsching E and others
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Blast, Blat, and Align Sequences

  • Blast -- java-free NCBI blast launch
  • Swiss -- blastp and tBlastn HTGS, UniGene at EMBnet
  • Blast2 -- restricts blast to user query and target
  • BlastU -- blast query against user fasta database
  • Batch -- batch blast from Baylor
  • Blat -- quick alignment of query to human genome assembly
  • HumFin -- blast finished human genome chromosome
  • Mus 1+ 2 -- blast finished mouse genome by chromosome
  • Ensembl -- blast human genome project
  • Sanger -- blast sequencing center chromosomes
  • Traces -- blast against raw new genomic trace reads
  • SSAHA -- trace server at Ensembl
  • Hunt -- search human novel transcript cDNAs
  • WABA -- genomic to genomic comparisons
  • Pipmaker -- percent identity plot alignment of two genomic sequences
  • DBA -- aligns two sequences sharing conserved blocks
  • Alfresco -- comparative genome sequence analysis

  • ClustalW -- aligns multiple sequences
  • MAlign -- aligns multiple sequences with flexible formatting
  • Lalign -- find multiple matching subsegments in two sequences
  • Consensus -- calculates consensus to ClustalW alginment
  • Fasta3 -- fasta3 alignment of protein sequence
  • SnpFasta3 -- alignment to HgBase SNP consortium
  • MPsrch -- alignment tool with many parameter controls
  • Scanps -- multi-alignment of query protein sequence