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2017-07-11
Congratulations Philipp Fervers for for the successful defense of his doctoral thesis.
2017-07-24
Yukie Kashima, welcome to our institute!
2017-07-11
"Inferring clonal structure in HTLV-1-infected individuals: towards bridging the gap between analysis and visualization” by Farmanbar et al. has bee published by Human Genomics.
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2017-07-03
Welcome Reza Halabian, our new PhD student..
2017-06-27
"Sequencing and phasing cancer mutations in lung cancers using a long-read portable sequencer” by Suzuki et al. has bee published by DNA Research.
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2017-07-14
"Serotyping dengue virus with isothermal amplification and a portable sequencer.” by Yamagishi at al. has been published by Scientific Reports.
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2017-04-21
"Contribution of Transposable Elements to Human Proteins" by Makalowski, Kischka and Makalowska has been published by eLS.
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2017-04-25
"Multicolor immuno- fluorescence reveals that p63- and or K5-positive progenitor cells contribute to normal breast epithelium and usual ductal hyperplasia but not to low-grade intraepithelial neoplasia of the breast." by Boecker / Korsching et al. has been published by Virchows Archiv.
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2017-03-07
Congratulations to Marcin Jakalski for the successful defense of his PhD thesis.

Blast, Blat, and Align Sequences

  • Blast -- java-free NCBI blast launch
  • Swiss -- blastp and tBlastn HTGS, UniGene at EMBnet
  • Blast2 -- restricts blast to user query and target
  • BlastU -- blast query against user fasta database
  • Batch -- batch blast from Baylor
  • Blat -- quick alignment of query to human genome assembly
  • HumFin -- blast finished human genome chromosome
  • Mus 1+ 2 -- blast finished mouse genome by chromosome
  • Ensembl -- blast human genome project
  • Sanger -- blast sequencing center chromosomes
  • Traces -- blast against raw new genomic trace reads
  • SSAHA -- trace server at Ensembl
  • Hunt -- search human novel transcript cDNAs
  • WABA -- genomic to genomic comparisons
  • Pipmaker -- percent identity plot alignment of two genomic sequences
  • DBA -- aligns two sequences sharing conserved blocks
  • Alfresco -- comparative genome sequence analysis

  • ClustalW -- aligns multiple sequences
  • MAlign -- aligns multiple sequences with flexible formatting
  • Lalign -- find multiple matching subsegments in two sequences
  • Consensus -- calculates consensus to ClustalW alginment
  • Fasta3 -- fasta3 alignment of protein sequence
  • SnpFasta3 -- alignment to HgBase SNP consortium
  • MPsrch -- alignment tool with many parameter controls
  • Scanps -- multi-alignment of query protein sequence