University School of Medicine

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Congratulations Philipp Fervers for for the successful defense of his doctoral thesis.
Yukie Kashima, welcome to our institute!
"Inferring clonal structure in HTLV-1-infected individuals: towards bridging the gap between analysis and visualization” by Farmanbar et al. has bee published by Human Genomics.
Welcome Reza Halabian, our new PhD student..
"Sequencing and phasing cancer mutations in lung cancers using a long-read portable sequencer” by Suzuki et al. has bee published by DNA Research.
"Serotyping dengue virus with isothermal amplification and a portable sequencer.” by Yamagishi at al. has been published by Scientific Reports.
"Contribution of Transposable Elements to Human Proteins" by Makalowski, Kischka and Makalowska has been published by eLS.
"Multicolor immuno- fluorescence reveals that p63- and or K5-positive progenitor cells contribute to normal breast epithelium and usual ductal hyperplasia but not to low-grade intraepithelial neoplasia of the breast." by Boecker / Korsching et al. has been published by Virchows Archiv.
Congratulations to Marcin Jakalski for the successful defense of his PhD thesis.

Blast, Blat, and Align Sequences

  • Blast -- java-free NCBI blast launch
  • Swiss -- blastp and tBlastn HTGS, UniGene at EMBnet
  • Blast2 -- restricts blast to user query and target
  • BlastU -- blast query against user fasta database
  • Batch -- batch blast from Baylor
  • Blat -- quick alignment of query to human genome assembly
  • HumFin -- blast finished human genome chromosome
  • Mus 1+ 2 -- blast finished mouse genome by chromosome
  • Ensembl -- blast human genome project
  • Sanger -- blast sequencing center chromosomes
  • Traces -- blast against raw new genomic trace reads
  • SSAHA -- trace server at Ensembl
  • Hunt -- search human novel transcript cDNAs
  • WABA -- genomic to genomic comparisons
  • Pipmaker -- percent identity plot alignment of two genomic sequences
  • DBA -- aligns two sequences sharing conserved blocks
  • Alfresco -- comparative genome sequence analysis

  • ClustalW -- aligns multiple sequences
  • MAlign -- aligns multiple sequences with flexible formatting
  • Lalign -- find multiple matching subsegments in two sequences
  • Consensus -- calculates consensus to ClustalW alginment
  • Fasta3 -- fasta3 alignment of protein sequence
  • SnpFasta3 -- alignment to HgBase SNP consortium
  • MPsrch -- alignment tool with many parameter controls
  • Scanps -- multi-alignment of query protein sequence