WWU Münster UKM
Congratulations to Reza and Matias on the excellent contribution on TE-driven DNA transductions in the human genome
"Somatic Functional Deletions of Upstream Open Reading Frame-Associated Initiation and Termination Codons in Human Cancer" was published by MDPI
Genome Assembly and Annotation of the California Harvester Ant Pogonomyrmex californicus (Buckley, 1867)
"GenoTypeMapper: graphical genotyping on genetic and sequence-based maps" by Deblieck, Fatiukha, Grundmann et al. has been published by Plant Methods.
"The multi-comparative 2-n-way genome suite" by Churakov, Zhang, Grundmann et al. has been published by Genome Research.
"RAB5A and TRAPPC6B are novel targets for Shiga toxin 2a inactivation in kidney epithelial cells" by Kouzel at al. has been published by Scientific Reports.
"Enhancer occlusion transcripts regulate the activity of human enhancer domains via transcriptional interference: a computational perspective" by Pande et al. has been published by Nucleic Acid Research
Congratulations Felix Manske on getting the GBM-Masterpreis!

Victoria Shabardina

Victoria Shabardina
Dr. rer. nat. Victoria Shabardina
postdoctoral researcher
  • graduated from Moscow State University in 2010, Department of Biology, Bioorganic Chemistry
  • postgraduate studies completed in 2015 at ZMBE, Institute for Medical Biochemistry, University of Muenster supervisor Prof. Volker Gerke
Main experience
  • cell culture, molecular cloning and expression of recombinant proteins
  • biochemical chrachterisation of proteins: binding and localization in the cell, conformation, physical properties
  • confocal fluorescent microscopy, spectrometry, FRET, QCM
  • high throughput sequencing and the data analysis, analysis of RNAseq data, molecular phylogeny, comparative transcriptomics
Current projects
  • phylogenetic analysis of ERM (ezrin, radixin, moesin) cytoskeletal proteins in Metazoa
  • development of the pipeline for the analysis of ONT MinION sequencing data
  • side projects: genome and transcriptome analysis of Tardigrades; searching for specific SNVs in the uORF regions in cancer patients genomic data
Completed projects
  • comparing genome and transcriptome structures of the two amoeba species with the different ecological background
Teaching experience
  • Conducting practicals and delivering part of the lecture course for the bachelor students of Universuty of Muenster
  • Conducting workshops on bioinformatics analysis of MinION sequencing data at the summer schools "The MinION sequencing and its applications" in 2017 (Bankgkok, Thailand) and 2018 (Manado, Indonesia), and Bioinformatics Summer School 2017 in Poznan, Poland
List of publications
  • Mode of ezrin-membrane interaction as a Function of PIP2 binding and pseudophosphorylation, Biophys J. 2016 by Shabardina V., Kramer C., Gerdes B., Braunger J., Cordes A., Schaefer J., Mey I., Grill D., Gerke V., Steinem C. See here
  • Environmental adaptation of Acanthamoeba castellanii and Entamoeba histolytica at genome level as seen by comparative genomic analysis, Int J Biol Sci. 2018 by Shabardina V., Kischka T., Kmita H., Suzuki Y., Makalowski W. See here
  • The emerging picture of the mitochondrial protein import complexes of Amoebozoa supergroup, BMC Genomics 2017 by Wojtkowska M.,\ Buczek D., Suzuki Y., Shabardina V., Makalowski W., Kmita H. See here
  • Chapter for "Bioinformatics", Makalowski W., Shabardina V., Makalowska I., 2018, eLS, John Wiley & Sons Ltd, Chichester
  • NanoPipe, an interactive tool for MinION sequencing analysis, GigaScience 2019, in print by Shabardina V., Kischka T., Manske F., Grundmann N., Frith M.C., Suzuki Y., Makalowski W.
2019-01-25 15:31