NEWS
2024-11-04
"miR-193b-5p and miR-374b-5p Are Aberrantly Expressed in Endometriosis
and Suppress Endometrial Cell Migration In Vitro" by Caroline Frisendahl, Eberhard
Korsching et al. has been published in Biomolecules.
View
2024-10-01
Congratulations to Felix Manske for the succesful defense of the
PhD thesis.
2024-06-13
"Application of a new data management system to the study of the
gut microbiome of children who are small for their gestational
age" by Manske et al. has been uploaded to bioRxiv.
View
2024-06-07
"Interplay of miR-542, miR-126, miR-143 and miR-26b with PI3K-Akt
is a Diagnostic Signal and Putative Regulatory Target in
HPV-Positive Cervical Cancer" by Akram Rahimi-Moghaddam, Nassim
Ghorbanmehr, Sedigheh Gharbi, Fatemeh Nili and Eberhard Korsching
has been published by Biochemical Genetics
View
2023-08-28
"The complete sequence of a human Y chromosome” by T2T Consortium
has been published by Nature
View
2022-10-28
"The new uORFdb: integrating literature, sequence, and variation
data in a central hub for uORF research" by Felix Manske, Lynn Ogoniak,
Norbert Grundmann and Wojciech Makalowski has been published by
Nucleic Acids Research.
View
2022-07-08
"A Map of 3' DNA Transduction Variants Mediated by Non-LTR
Retroelements on 3202 Human Genomes" by Reza Halabian and Wojciech
Makalowski has been published by Biology.
View
2022-06
"paPAML: An Improved Computational Tool to Explore Selection
Pressure on Protein-Coding Sequences" by Lynn Ogoniak, Norbert
Grundmann and others
View
2022-05-14
"Mobilome of Apicomplexa Parasites" by Rodriguez and Makalowski
has been published by Genes.
View
2022-04-27
"Software evaluation for de novo detection of transposons" by
Rodriguez and Makalowski has been published by Mobile DNA.
View
2022-04-01
"From telomere to telomere: The transcriptional and epigenetic
state of human repeat elements" by T2T consortium has been
published by Science.
Goto
2022-02-12
"Global research alliance in infectious disease: a collaborative
effort to combat infectious diseases through dissemination of
portable sequencing" by GRAID consortium that IoB is part of has
been published by BMC Research Notes.
Goto
Felix Manske
Contact
| Status: | Doctoral student |
| E-mail: | felix.manske@uni-muenster.de |
| Room: | 110.004 |
| Phone: | +49-251-8353007 |
Education
| 01/2020 - Present: | Doctoral studies (Bioinformatics), Münster Graduate School of Evolution, University of Münster |
| 06/2019: | Master of Science (Biosciences), University of Münster |
| 06/2018 - 09/2018: | Advanced Pharma Management Blue Belt Training, University of Münster |
| 11/2017 - 02/2018: | Industrial Pharma Management White Belt Training, University of Münster |
| 10/2016: | Training according to § 15 GenTSV, University of Münster |
| 08/2016: | Bachelor of Science (Biosciences), University of Münster |
Honors and Awards
| 01/2020: | Master Award from the German Society for Biochemistry and Molecular Biology |
Teaching
| 11/2019 - Present: | Teaching assistant Bioinformatics 1 praticals (winter term) |
| 12/2021 - 10/2022: | Mentored Lynn Ogoniak during her master thesis
“Analysis of upstream open reading frames in human cancer genomes” |
| 02/2021 - 11/2021: | Supervised Lynn Ogoniak during her internship on uORF detection
and uORF evolutionary analysis |
| 11/2020 - 09/2021: | Mentored Marc-Nicolas Bendisch during his master thesis
“Benchmarking metagenomic tools for short and long reads” |
| 04/2021 - 06/2021: | Supervised Ina Schüßler during her research module on
SNP phasing in nanopore sequencing data |
Presentations
Oral Presentations
| Manske, F., Ogoniak, L., Jürgens, L., Grundmann, N., Makałowski, W. and Wethmar, K. (2023, Sep.) uORFdb: A central hub for upstream open reading frames. Lab meeting of Prof. Martin Frith's group, Kashiwa, Japan. |
| Manske, F., Ogoniak, L., Jürgens, L., Grundmann, N., Makałowski, W. and Wethmar, K. (2023, Mar.) uORFdb: A central resource for translational regulation by upstream open reading frames. Münster Evolution Meeting, Münster, Germany. |
| Manske, F. (2019, Sep.) Using UNIX on the command line. EvoPAD summer school Bioinformatics, Halberstadt, Germany. |
| Manske, F. (2019, Jul.) Introduction to the command line. Symposium and Workshop for Diagnosis-by-Sequencing using MinION, Hokkaido University, Sapporo, Japan. |
| Manske, F. (2019, Jul.) MetaGenomic analysis of short and long reads. Symposium and Workshop for Diagnosis-by-Sequencing using MinION, Hokkaido University, Sapporo, Japan. |
Poster Presentations
| Manske, F., Ogoniak, L., Jürgens, L., Grundmann, N., Makałowski, W. and Wethmar, K. (2023, Oct.) uORFdb: A central resource for translational regulation by upstream open reading frames. The 14th International Workshop on Advanced Genomics, Tokyo, Japan. |
| Manske, F., Bendisch, M.-N., Grundmann, N. and Makałowski, W. (2021, Nov.) High-performance microbiome analysis with MetaG. Cold Spring Harbor Laboratory Conference Genome Informatics (virtual). |
| Manske, F., Bendisch, M.-N., Grundmann, N. and Makałowski, W. (2021, Sep.) High-performance microbiome analysis with MetaG. Center for Molecular Medicine Cologne Symposium (virtual). |
| Manske, F., Bendisch, M.-N., Grundmann, N. and Makałowski, W. (2021, May) MetaGenomic analysis of short and long reads. London Calling (virtual). |
Publications
| Manske,F., Durda-Masny,M., Grundmann,N., Mazela,J., Englert-Golon,M., Szymankiewicz-Bręborowicz,M., Ciomborowska-Basheer,J., Makałowska,I., Szwed,A. and Makałowski, W. (2024) Application of a new data management system to the study of the gut microbiome of children who are small for their gestational age bioRxiv, https://doi.org/10.1101/2024.06.11.598475, 13 June 2024, pre-print: not peer-reviewed. Paper Tool |
| Manske,F., Ogoniak,L., Jürgens,L., Grundmann,N., Makałowski,W. and Wethmar,K. (2023) The new uORFdb: integrating literature, sequence, and variation data in a central hub for uORF research. Nucleic Acids Res., 51, D328–D336. Paper Tool |
| Jürgens, L., Manske, F., Hubert, E., Kischka, T., Flötotto, L., Klaas, O., Shabardina, V., Schliemann, C., Makałowski, W. and Wethmar, K. (2021) Somatic Functional Deletions of Upstream Open Reading Frame-Associated Initiation and Termination Codons in Human Cancer. Biomedicines, 9, 618. Paper |
| Manske, F., Grundmann, N. and Makałowski, W. (2020) MetaGenomic analysis of short and long reads. bioRxiv, https://doi.org/10.1101/2020.03.13.991190, 15 March 2020, pre-print: not peer-reviewed. Paper Tool |
| Shabardina, V., Kischka, T., Manske, F., Grundmann, N., Frith, M.C., Suzuki, Y. and Makałowski, W. (2019) NanoPipe—a web server for nanopore MinION sequencing data analysis. GigaScience, 8, giy169. Paper Tool |
2024-08-27 09:33
