Institute of Bioinformatics Münster
MetagenomicsDB
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Selection History
Welcome to MetagenomicsDB!
Query the database by selecting a topic. After selecting a topic, a dialog will appear where you can enter search criteria and submit the query. Please note that you cannot restrict your search with criteria from different topics using this query page. The selectable fields have a symbol in front: "T" is for text, "I" for integers, and "F" for floats. Text is automatically removed from fields of type "F" and "I". No autocorrection is applied to fields of type "T" which can contain characters, integers, and floats (or any combination thereof).
The different criteria will be joined by an "and" condition. Different values of a criterion will be joined by an "or". You can choose following operators: "<", "<=", ">" and ">=" for all enterable fields, "," as a "marker" for sets and "~" at the beginning of strings to search for patterns. If you omit the "search method" it is automatically "=".
That means you may enter ">123" to select numbers greater than 123, ">abc <def" to get all values between "abc" and "def". A criterion as "1,2,3" will search for values in the set {1,2,3}. Note, that the greater and lower operators are combined by an "and"! That means >100 combined with <10 does NOT give any result! And also note, that in text fields the following is true: "B1" > "B"!
For performance reasons, the number of hits per topic is limited to 1000 for Patients and 10000 for Samples and Taxa.
# Sequences
Ranks
domain
phylum
class
subclass
order
suborder
family
genus
species
strain
Avg. Read
Length
Quality
Count
Customize the export for the MicrobiomeAnalyst. Click on "Control samples" if you wish to include them. Enter a comma separated list of taxa that are excluded.
Control samples
Excluded taxa