Welcome to Bioinformatics 1 web page
This page is dedicated to Bioinformatics 1 course taught in winter semester 2011. The lectures will start on October 20th, at 10:00 sharp. Location: Institute of Botany lecture hall (SBI HS), Schlossgarten 3.
Prof. Kudla - Grundlagen der Genomik
Scripte: auf der Website der AG Kudla unter "teaching", siehe hier auf der rechten Seite unter "Downloads" oder direkt hier
Login: kurs
Passwort: mars
Die Scripte bitte VOR der Vorlesung herunterladen. Es stehen für jede Vorlesung drei inhaltlich identische Versionen im Netz:
- 2 Folien pro Seite bunt (zum Anschauen)
- 2 Folien pro Seite schwarz-weis (zum Ausdrucken)
- 6 Folien pro Seite schwarz-weis (sparsame Druckversion)
Lecturers
Prof. Wojciech Makalowski; office hours: Tuesday 5:00 - 7:00 PM (Niels Stensen Strasse 14)
Prof. Claudia Aquisti; office hours: Wednesday 3:00 - 5:00 PM (Hüfferstrasse 1)
Instructors
Jasmin Dröge; office hours: Monday 3:00 - 5:00 PM (Niels Stensen Strasse 14)
Jessin Janice; office hours: Friday 12:00 - 2:00 PM (Niels Stensen Strasse 14)
Amit Pande: office hours: Wednesday 3:00 - 5:00 PM (Niels Stensen Strasse 14)
Kathrin Poos; office hours: Thursday 3:00 - 5:00 PM (Niels Stensen Strasse 12)
Stefanie Henze; office hours: Thursday 3:00 - 5:00 PM (Hüfferstrasse 1)
K. Parijat Tripathi; office hours: Thursday 4:00 - 6:00 PM (Hüfferstrasse 1)
Syllabus
| Date | Topic | Handouts |
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10-20-2011 |
Introduction to bioinformatics from an evolutionary perspective |
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10-27-2011 |
Principles of heredity. Mutations, substitutions and polymorphisms |
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11-03-2011 |
Distances and models. Synonymous and non-synonymous substitutions. Basics of the neutral theory. |
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11-10-2011 |
Sequence alignment and similarity search |
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11-17-2011 |
Gene prediction |
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11-24-2011 |
Phylogenetic inference |
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12-01-2011 |
Protein analyses |
Practicals - computer lab
| Week | Topic | Instructors |
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11-14-2011 |
J. Janice, K. Poos, |
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11-21-2011 |
J. Droege, A. Pande |
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11-28-2011 |
S. Henze, K. P. Tripathi |
Download sequence for phylogenetic analysis from here
Registration here
Recommended textbooks
Please note that there is no specific textbook that we follow but these two books cover all the material plus some extras.
