Uni Münster Med. Fakultaet
IoB
NEWS
2023-08-28
"The complete sequence of a human Y chromosome” by T2T Consortium has been published by Nature
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2022-10-28
"The new uORFdb: integrating literature, sequence, and variation data in a central hub for uORF research” by Felix Manske, Lynn Ogoniak, Norbert Grundmann and Wojciech Makałowski has been published by Nucleic Acids Research.
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2022-07-08
"A Map of 3' DNA Transduction Variants Mediated by Non-LTR Retroelements on 3202 Human Genomes” by Reza Halabian and Wojciech Makałowski has been published by Biology.
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2022-06
"paPAML: An Improved Computational Tool to Explore Selection Pressure on Protein-Coding Sequences" by Lynn Ogoniak, Norbert Grundmann and others
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2022-05-14
"Mobilome of Apicomplexa Parasites" by Rodriguez and Makalowski has been published by Genes.
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2022-04-27
"Software evaluation for de novo detection of transposons" by Rodriguez and Makalowski has been published by Mobile DNA.
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2022-04-01
"From telomere to telomere: The transcriptional and epigenetic state of human repeat elements” by T2T consortium has been published by Science.
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2022-02-12
"Global research alliance in infectious disease: a collaborative effort to combat infectious diseases through dissemination of portable sequencing” by GRAID consortium that IoB is part of has been published by BMC Research Notes.
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2021-08-05
Congratulations to Reza and Matias on the excellent contribution on TE-driven DNA transductions in the human genome
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2021-05-29
"Somatic Functional Deletions of Upstream Open Reading Frame-Associated Initiation and Termination Codons in Human Cancer" was published by MDPI
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Reza Halabian

Reza Halabian reza halabian
Name Reza Halabian
StatusPh.D. Student
E-mailreza.halabian[at]uni-muenster.de
reza.halabian[at]ukmuenster.de
Room110.005
Phone+49 251 8353002

Research interests

  • Single-cell multimodal informatics
  • Detection of somatic structural variants using single-molecule sequencing data
  • Medical genomics
  • Immunoinformatics
  • Clonal evolution analysis in cancer
  • Translational bioinformatics
  • Genome assembly and annotation

Education

PhD Project

  • Retroelement-driven structural mutations in cancer and healthy genomes

Publications

  • Rhie, A.; Nurk, S.; Cechova, M.; Hoyt, S. J.; Taylor, D. J.; Altemose, N.; Hook, P. W.; Koren, S.; Rautiainen, M.; Alexandrov, I. A.; Allen, J.; Asri, M.; Bzikadze, A. V.; Chen, N.-C.; Chin, C.-S.; Diekhans, M.; Flicek, P.; Formenti, G.; Fungtammasan, A.; Garcia Giron, C.; Garrison, E.; Gershman, A.; Gerton, J. L.; Grady, P. G. S.; Guarracino, A.; Haggerty, L.; Halabian, R.; Hansen, N. F.; Harris, R.; Hartley, G. A.; Harvey, W. T.; Haukness, M.; Heinz, J.; Hourlier, T.; Hubley, R. M.; Hunt, S. E.; Hwang, S.; Jain, M.; Kesharwani, R. K.; Lewis, A. P.; Li, H.; Logsdon, G. A.; Lucas, J. K.; Makalowski, W.; Markovic, C.; Martin, F. J.; Mc Cartney, A. M.; McCoy, R. C.; McDaniel, J.; McNulty, B. M.; Medvedev, P.; Mikheenko, A.; Munson, K. M.; Murphy, T. D.; Olsen, H. E.; Olson, N. D.; Paulin, L. F.; Porubsky, D.; Potapova, T.; Ryabov, F.; Salzberg, S. L.; Sauria, M. E. G.; Sedlazeck, F. J.; Shafin, K.; Shepelev, V. A.; Shumate, A.; Storer, J. M.; Surapaneni, L.; Taravella Oill, A. M.; Thibaud-Nissen, F.; Timp, W.; Tomaszkiewicz, M.; Vollger, M. R.; Walenz, B. P.; Watwood, A. C.; Weissensteiner, M. H.; Wenger, A. M.; Wilson, M. A.; Zarate, S.; Zhu, Y.; Zook, J. M.; Eichler, E. E.; O’Neill, R. J.; Schatz, M. C.; Miga, K. H.; Makova, K. D.; Phillippy, A. M., The complete sequence of a human Y chromosome. Nature 2023. doi: 10.1038/s41586-023-06457-y
  • Halabian R, Makałowski W. A Map of 3′ DNA Transduction Variants Mediated by Non-LTR Retroelements on 3202 Human Genomes. Biology. 2022; 11(7):1032.doi: 10.3390/biology11071032
  • Hoyt SJ, Storer JM, Hartley GA, Grady PGS, Gershman A, de Lima LG, Limouse C, Halabian R, Wojenski L, Rodriguez M, Altemose N, Rhie A, Core LJ, Gerton JL, Makalowski W, Olson D, Rosen J, Smit AFA, Straight AF, Vollger MR, Wheeler TJ, Schatz MC, Eichler EE, Phillippy AM, Timp W, Miga KH, O'Neill RJ. From telomere to telomere: The transcriptional and epigenetic state of human repeat elements. Science. 2022 Apr;376(6588):eabk3112. doi: 10.1126/science.abk3112
  • Jonas Bohn, Reza Halabian, Lukas Schrader, Victoria Shabardina, Raphael Steffen, Yutaka Suzuki, Ulrich R Ernst, Jürgen Gadau, Wojciech Makalowski, Genome assembly and annotation of the California harvester ant Pogonomyrmex californicus, G3 Genes|Genomes|Genetics, Volume 11, Issue 1, January 2021, jkaa019, doi: 10.1093/g3journal/jkaa019

Teaching

  • Winter semester of 2022, Bioinformatics 1 practicals course, Instructor, University of Münster, Germany
  • Winter semester of 2021, Bioinformatics 1 practicals course, Instructor, University of Münster, Germany
  • Winter semester of 2020, Bioinformatics 1 practicals course, Instructor, University of Münster, Germany
  • Winter semester of 2019, Bioinformatics 1 practicals course, Instructor, University of Münster, Germany
  • Winter semester of 2018, Bioinformatics 1 practicals course, Instructor, University of Münster, Germany

Conferences and workshops

  • July 3-6, 2023: Participation in the course of 14th Poznan summer school of bioinformatics with the topic of the analysis of single-cell data, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland.
  • November 3-5, 2021: Virtual Cold Spring Harbor Laboratory (CSHL) conference on genome informatics. Participant with a poster, Title: DNA transductions mediated by non-LTR retroelements in the complete human genome (T2T-CHM13), Reza Halabian et al.
  • October 6-9, 2020: Virtual Cold Spring Harbor Laboratory (CSHL) conference on transposable elements. Participant with a poster, Title: Frequent polymorphic DNA transductions in human populations, Reza Halabian and Wojciech Makalowski.
  • September 4-8, 2017: Participation in the course of 12th Poznan summer school of bioinformatics with the topic of NGS in medical research, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland.
  • 2007, November: 5th national conference of biotechnology. Participant with an oral presentation, Title: Detection SNPs of Bovine Prolactin Gene, Tehran, Iran.
  • 2006.09.12-24: Coursework training (2 weeks) in Bioinformatics for MD simulation, CinnaGen, Tehran, Iran.
  • 2006.10.12-24: Coursework training (2 weeks) in PCR for Diagnosis: Design of Laboratory, Real Time PCR, Diagnosis for HIV. CinnaGene, Tehran, Iran.

Other

2023-09-05 19:07