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NEWS
2021-08-05
Congratulations to Reza and Matias on the excellent contribution on TE-driven DNA transductions in the human genome
Goto
2021-05-29
"Somatic Functional Deletions of Upstream Open Reading Frame-Associated Initiation and Termination Codons in Human Cancer" was published by MDPI
Goto
2020-12-04
Genome Assembly and Annotation of the California Harvester Ant Pogonomyrmex californicus (Buckley, 1867)
Goto
2020-09-10
"GenoTypeMapper: graphical genotyping on genetic and sequence-based maps" by Deblieck, Fatiukha, Grundmann et al. has been published by Plant Methods.
Goto
2020-03-18
"The multi-comparative 2-n-way genome suite" by Churakov, Zhang, Grundmann et al. has been published by Genome Research.
Goto
2020-03-18
"RAB5A and TRAPPC6B are novel targets for Shiga toxin 2a inactivation in kidney epithelial cells" by Kouzel at al. has been published by Scientific Reports.
Goto
2020-03-05
"Enhancer occlusion transcripts regulate the activity of human enhancer domains via transcriptional interference: a computational perspective" by Pande et al. has been published by Nucleic Acid Research
Goto
2020-01-21
Congratulations Felix Manske on getting the GBM-Masterpreis!
Goto

Reza Halabian

Reza Halabian reza halabian
Name Reza Halabian
StatusPh.D. Student
E-mailreza.halabian[at]uni-muenster.de
reza.halabian[at]ukmuenster.de
Room110.005
Phone+49 251 8353002

Interests

  • Detection of somatic structural variants using single-molecule sequencing data
  • Multimodal single-cell informatics
  • NGS informatics
  • Immunoinformatics
  • Medical genomics
  • Mobile element insertions in health and disease
  • Clonal evolution analysis in cancer
  • Translational bioinformatics

Curriculum

PhD Project

  • Transposon-driven structural mutations in cancer and healthy genomes

Publications

  • Jonas Bohn, Reza Halabian, Lukas Schrader, Victoria Shabardina, Raphael Steffen, Yutaka Suzuki, Ulrich R Ernst, Jürgen Gadau, Wojciech Makalowski, Genome assembly and annotation of the California harvester ant Pogonomyrmex californicus, G3 Genes|Genomes|Genetics, Volume 11, Issue 1, January 2021, jkaa019, doi: 10.1093/g3journal/jkaa019

Teaching

  • Winter semester of 2020, Bioinformatics 1 practicals course, Instructor, University of Münster, Germany.
  • Winter semester of 2019, Bioinformatics 1 practicals course, Instructor, University of Münster, Germany.
  • Winter semester of 2018, Bioinformatics 1 practicals course, Instructor, University of Münster, Germany.

Conferences and workshops

  • October 6-9, 2020: Virtual Cold Spring Harbor Laboratory (CSHL) conference on transposable elements. Participant with a poster, Title: Frequent polymorphic DNA transductions in human populations, Reza Halabian and Wojciech Makalowski.
  • September 4-8, 2017: Participation in the course of 12th Poznan summer school of bioinformatics with the topic of NGS in medical research, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland.
  • 2007, November: 5th national conference of biotechnology. Participant with an oral presentation, Title: Detection SNPs of Bovine Prolactin Gene, Tehran, Iran.
  • 2006.09.12-24: Coursework training (2 weeks) in Bioinformatics for MD simulation, CinnaGen, Tehran, Iran.
  • 2006.10.12-24: Coursework training (2 weeks) in PCR for Diagnosis: Design of Laboratory, Real Time PCR, Diagnosis for HIV. CinnaGene, Tehran, Iran.

Other

  • March 2021- present: Member of the Telomere-to-Telomere (T2T) human genome consortium.
  • December 2017- present: Member of Münster Graduate School of Evolution (MGSE), University of Münster, Germany.
  • 2007- present: Member of Biosafety Society of Iran
  • 2007- present: Member of Iranian Genetics Society (I.G.S.)
2021-09-02 13:18