uORF summary

Version 1.1 (2021-03-08)

The results shown here are in part based upon data generated by the TCGA Research Network Click

Entity and variant selection

Choose an entity and which variant type to display. These filters apply to all tables.

Entity:

Variant Type:

Custom filter combination

Choose a custom combination of filters to apply. If you choose 'Custom', you can choose any combination of filters. If you choose one of the others, your previous choice is overwritten.

These filters are applied to the 'Custom row' of the tables 1 and 2, and to the entire table 3.

Filter Preset:

None Custom 1 2a 2b 2c 3a 3b 3c

Output

Text summary

Table 1) Number of unique loci for different filter levels

Table 2) Number of unique patients for different filter levels

Table 3) Detailed results

All filters previously selected are applied to this table.

Choose affected codon:

Choose a specific uStart/uStop codon to filter on the 'Start/Stop codon affected' column. This filter only applies to table 3.

Min. number of alt reads in tumor

Min. percentage of patients with somatic mutation

Min. cohort size

uORF summary

Entity and variant selection

Custom filter combination

Five Filters

Functional Consequences

Recurrent

>= 1 % of patients

>= 10 tumor alt reads and VAF >= 12 %

Output

Text summary

Table 1) Number of unique loci for different filter levels

Table 2) Number of unique patients for different filter levels

Table 3) Detailed results

Choose which variant effect(s) to include