Uni Münster Med. Fakultaet
IoB
NEWS
2024-02
NewickTreeModifier: a simple web page to prune and modify Newick trees
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2023-08-28
"The complete sequence of a human Y chromosome” by T2T Consortium has been published by Nature
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2022-10-28
"The new uORFdb: integrating literature, sequence, and variation data in a central hub for uORF research” by Felix Manske, Lynn Ogoniak, Norbert Grundmann and Wojciech Makałowski has been published by Nucleic Acids Research.
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2022-07-08
"A Map of 3' DNA Transduction Variants Mediated by Non-LTR Retroelements on 3202 Human Genomes” by Reza Halabian and Wojciech Makałowski has been published by Biology.
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2022-06
"paPAML: An Improved Computational Tool to Explore Selection Pressure on Protein-Coding Sequences" by Lynn Ogoniak, Norbert Grundmann and others
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2022-05-14
"Mobilome of Apicomplexa Parasites" by Rodriguez and Makalowski has been published by Genes.
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2022-04-27
"Software evaluation for de novo detection of transposons" by Rodriguez and Makalowski has been published by Mobile DNA.
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2022-04-01
"From telomere to telomere: The transcriptional and epigenetic state of human repeat elements” by T2T consortium has been published by Science.
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2022-02-12
"Global research alliance in infectious disease: a collaborative effort to combat infectious diseases through dissemination of portable sequencing” by GRAID consortium that IoB is part of has been published by BMC Research Notes.
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2021-08-05
Congratulations to Reza and Matias on the excellent contribution on TE-driven DNA transductions in the human genome
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2021-05-29
"Somatic Functional Deletions of Upstream Open Reading Frame-Associated Initiation and Termination Codons in Human Cancer" was published by MDPI
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Felix Manske
Felix_M

Contact

Status: Doctoral student
E-mail: felix.manske@uni-muenster.de
Room: 110.004
Phone: +49-251-8353007

Education

01/2020 - Present: Doctoral studies (Bioinformatics), Münster Graduate School of Evolution, University of Münster
06/2019: Master of Science (Biosciences), University of Münster
06/2018 - 09/2018: Advanced Pharma Management Blue Belt Training, University of Münster
11/2017 - 02/2018: Industrial Pharma Management White Belt Training, University of Münster
10/2016: Training according to § 15 GenTSV, University of Münster
08/2016: Bachelor of Science (Biosciences), University of Münster

Honors and Awards

01/2020:      Master Award from the German Society for Biochemistry and Molecular Biology

Teaching

11/2019 - Present: Teaching assistant Bioinformatics 1 praticals (winter term)
12/2021 - 10/2022: Mentored Lynn Ogoniak during her master thesis “Analysis of upstream open reading
frames in human cancer genomes”
02/2021 - 11/2021: Supervised Lynn Ogoniak during her internship on uORF detection and uORF evolutionary
analysis
11/2020 - 09/2021: Mentored Marc-Nicolas Bendisch during his master thesis “Benchmarking metagenomic
tools for short and long reads”
04/2021 - 06/2021: Supervised Ina Schüßler during her research module on SNP phasing in nanopore
sequencing data

Presentations

Oral Presentations

Manske, F., Ogoniak, L., Jürgens, L., Grundmann, N., Makałowski, W. and Wethmar, K. (2023, Sep.) uORFdb: A central hub for upstream open reading frames. Lab meeting of Prof. Martin Frith's group, Kashiwa, Japan.
Manske, F., Ogoniak, L., Jürgens, L., Grundmann, N., Makałowski, W. and Wethmar, K. (2023, Mar.) uORFdb: A central resource for translational regulation by upstream open reading frames. Münster Evolution Meeting, Münster, Germany.
Manske, F. (2019, Sep.) Using UNIX on the command line. EvoPAD summer school Bioinformatics, Halberstadt, Germany.
Manske, F. (2019, Jul.) Introduction to the command line. Symposium and Workshop for Diagnosis-by-Sequencing using MinION, Hokkaido University, Sapporo, Japan.
Manske, F. (2019, Jul.) MetaGenomic analysis of short and long reads. Symposium and Workshop for Diagnosis-by-Sequencing using MinION, Hokkaido University, Sapporo, Japan.

Poster Presentations

Manske, F., Ogoniak, L., Jürgens, L., Grundmann, N., Makałowski, W. and Wethmar, K. (2023, Oct.) uORFdb: A central resource for translational regulation by upstream open reading frames. The 14th International Workshop on Advanced Genomics, Tokyo, Japan.
Manske, F., Bendisch, M.-N., Grundmann, N. and Makałowski, W. (2021, Nov.) High-performance microbiome analysis with MetaG. Cold Spring Harbor Laboratory Conference Genome Informatics (virtual).
Manske, F., Bendisch, M.-N., Grundmann, N. and Makałowski, W. (2021, Sep.) High-performance microbiome analysis with MetaG. Center for Molecular Medicine Cologne Symposium (virtual).
Manske, F., Bendisch, M.-N., Grundmann, N. and Makałowski, W. (2021, May) MetaGenomic analysis of short and long reads. London Calling (virtual).

Publications

Manske,F., Ogoniak,L., Jürgens,L., Grundmann,N., Makałowski,W. and Wethmar,K. (2023) The new uORFdb: integrating literature, sequence, and variation data in a central hub for uORF research. Nucleic Acids Res., 51, D328–D336. Paper Tool
Jürgens, L., Manske, F., Hubert, E., Kischka, T., Flötotto, L., Klaas, O., Shabardina, V., Schliemann, C., Makałowski, W. and Wethmar, K. (2021) Somatic Functional Deletions of Upstream Open Reading Frame-Associated Initiation and Termination Codons in Human Cancer. Biomedicines, 9, 618. Paper
Manske, F., Grundmann, N. and Makałowski, W. (2020) MetaGenomic analysis of short and long reads. bioRxiv, https://doi.org/10.1101/2020.03.13.991190, 15 March 2020, pre-print: not peer-reviewed. Paper Tool
Shabardina, V., Kischka, T., Manske, F., Grundmann, N., Frith, M.C., Suzuki, Y. and Makałowski, W. (2019) NanoPipe—a web server for nanopore MinION sequencing data analysis. GigaScience, 8, giy169. Paper Tool
2024-01-24 16:46